MsXpS::libXpertMassCore::Processing::HighResPeakPicker Class

Provides a peak picking feature for data acquired on high resolving power instruments. More...

Public Types

Public Functions

	HighResPeakPicker()
	HighResPeakPicker(MsXpS::libXpertMassCore::Processing::HighResPeakPickerParameters &parameters, MsXpS::libXpertMassCore::Processing::LocalSignalToNoiseEstimator::Parameters signal_to_noise_estimator_params)
virtual	~HighResPeakPicker()
void	pick(const pappso::Trace &initial_trace, pappso::Trace &picked_peaks, QList<MsXpS::libXpertMassCore::Processing::HighResPeakPicker::PeakRange> &peak_ranges)
void	setLocalSignalToNoiseEstimatorParams(const MsXpS::libXpertMassCore::Processing::LocalSignalToNoiseEstimator::Parameters &parameters)
MsXpS::libXpertMassCore::Processing::HighResPeakPicker &	operator=(const MsXpS::libXpertMassCore::Processing::HighResPeakPicker &other)

Protected Variables

Detailed Description

Peak picking is also known as centroidation, where the software extracts from a profile mode shaped peak the m/z value that best represents it.

The process that is carried out in this picker is based on the modeling of the shaped peak profile using a spline model and on the determination of the centroid value out of it.

Member Function Documentation

HighResPeakPicker::HighResPeakPicker()

Constructs a HighResPeakPicker instance with default member values.

`[explicit]` HighResPeakPicker::HighResPeakPicker(MsXpS::libXpertMassCore::Processing::HighResPeakPickerParameters &parameters, MsXpS::libXpertMassCore::Processing::LocalSignalToNoiseEstimator::Parameters signal_to_noise_estimator_params)

Constructs a HighResPeakPicker instance with parameters and signal_to_noise_estimator_params.

`[virtual noexcept]` HighResPeakPicker::~HighResPeakPicker()

Destructs this instance.

void HighResPeakPicker::pick(const pappso::Trace &initial_trace, pappso::Trace &picked_peaks, QList<MsXpS::libXpertMassCore::Processing::HighResPeakPicker::PeakRange> &peak_ranges)

Runs the peak picking process on initial_trace.

In the process of peaking peaks picked_peaks is updated with found peaks and peak_ranges also.

For each found peak added to picked_peaks, a corresponding PeakRange item is added to peak_ranges. This allows to enquire about the range of any single peak in picked_peaks.

void HighResPeakPicker::setLocalSignalToNoiseEstimatorParams(const MsXpS::libXpertMassCore::Processing::LocalSignalToNoiseEstimator::Parameters &parameters)

Sets the member local signal-to-noise estimator parameters to parameters.

MsXpS::libXpertMassCore::Processing::HighResPeakPicker &HighResPeakPicker::operator=(const MsXpS::libXpertMassCore::Processing::HighResPeakPicker &other)

Assigns other to this instance and returns a reference to this instance.

Member Variable Documentation

MsXpS::libXpertMassCore::Processing::LocalSignalToNoiseEstimator::Parameters HighResPeakPicker::m_localSignalToNoiseEstimatorParams

This variable holds the local signal-to-noise estimator parameters.

MsXpS::libXpertMassCore::Processing::HighResPeakPickerParameters HighResPeakPicker::m_parameters

This variable holds the parameters required to configure the peak picker.

MsXpS::libXpertMassCore::Processing::LocalSignalToNoiseEstimator::Parameters	m_localSignalToNoiseEstimatorParams
MsXpS::libXpertMassCore::Processing::HighResPeakPickerParameters	m_parameters

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